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Core Facility:

Core Facility Bioinformatics

Head:

Mag.rer.nat. Dr.techn., Dietmar Rieder

Contact / booking:

dietmar.rieder@i-med.ac.at
Tel: +43 512 9003 71402

Biocenter/CCB (Innrain 80-82), 4th floor, room n° M04.413

  • Consultation services for experimental setup and data collection (number of samples needed, methodology and parameters for sequencing, possibilities and limits of data analytics (included in the user fee)
  • Data analytics
  • Development of specific tools and pipelines
  • Autonomous use of HPC infrastructure after first-time introduction
Service
 unit
Unit price/h (MUI internal fee)
Unit price (external academic use)
RNA-sequencing (bulk):
transcript quantification, DEG analysis
Experiment (12 samples)
EUR 200.-

+EUR 10.- / additional sample

EUR 400.-

+EUR 15.- / additional sample

ChIP-Seq: peak calling and annotation
Experiment (12 samples)
EUR 250.-

+EUR 10.- / additional sample

EUR 500.-

+EUR 15.- / additional sample

Bisulfite sequencing: quantification/CpG, functional annotation
Experiment (12 samples)
EUR 250.-

+EUR 10.- / additional sample

EUR 500.-

+EUR 15.- / additional sample

ATAC-seq:peak calling and annotation
Experiment (12 samples)
EUR 250.-

+EUR 10.- / additional sample

EUR 500.-

+EUR 15.- / additional sample

Exome-sequencing (WES):
Variant calling and annotation
Experiment (12 samples)
EUR 300.-

+EUR 10.- / additional sample

EUR 600.-

+EUR 15.- / additional sample

NeoAntigen:
prediction, annotation, ranking
Experiment (12 samples)
EUR 350.-

+EUR 10.- / additional sample

EUR 700.-

+EUR 15.- / additional sample

scRNA-seq:
pre-processing
Experiment (12 samples)
EUR 200.-

+EUR 10.- / additional sample

EUR 400.-

+EUR 15.- / additional sample

Custom analysis on demand, consulting
Experiment
On rquest
EUR 100.-/ Stunde
HPC
location
unit
Unit price/h (MUI internal fee)
Unit price (external academic use)
Daten Speicher
Rennweg 29a
200 GB / Monat
EUR 0.5-
EUR 10.-
User account
 
User/Monat
EUR 20.-
 

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Core Facilities